Artificial intelligence for detection of lung cancer using transfer learning and morphological features

Abstract

Lung cancer is an uncontrolled growth of tissue causing a lump in the human lung. If lung cancer can be detected early, it can increase the survival rate. Therefore, a multi-classification approach of lung nodule detection with high computational effectiveness is required. In this paper, a multi-classification approach of lung nodule detection and classification is proposed using artificial intelligence on computed tomography (CT) scan images. Different preprocessing steps are applied for resizing, smoothing, and enhancement of the CT images. Then, two different approaches for feature extraction using VGG16 transfer learning and morphological segmentation are proposed. Morphological segmentation and feature extraction are applied for the segmentation of the region of interest and to extract the distinct features. Finally, the proposed deep learning architecture and seven different machine learning algorithms are applied on the preprocessed data and the extracted features for the classification of lung nodules into three classes: malignant, benign, and normal. It is observed that the stacked ensemble model of deep learning convolutional neural network (CNN) and VGG16 transfer learning models (CNN+VGG16) can achieve 99.55% accuracy using preprocessed data. It is also observed that all the ML algorithms perform with reasonably high accuracy using the low-dimensional morphological features. It is observed from the fivefold cross-validation results that logistic regression performs with 99.36% accuracy in 23.71 s time using the preprocessed data. Whereas, using the morphological features, k-nearest neighbor, and the support vector machine perform with the highest accuracy of 99.76% with very reduced computational time of 0.017 and 0.008 s, respectively.

The Association Between Oncology Outreach and Timely Treatment for Rural Patients with Breast Cancer: A Claims-Based Approach

Abstract

Background

Oncology outreach is a common strategy for increasing rural access to cancer care, where traveling oncologists commute across healthcare settings to extend specialized care. Examining the extent to which physician outreach is associated with timely treatment for rural patients is critical for informing outreach strategies.

Methods

We identified a 100% fee-for-service sample of incident breast cancer patients from 2015 to 2020 Medicare claims and apportioned them into surgery and adjuvant therapy cohorts based on treatment history. We defined an outreach visit as the provision of care by a traveling oncologist at a clinic outside of their primary hospital service area. We used hierarchical logistic regression to examine the associations between patient receipt of preoperative care at an outreach visit (preoperative outreach) and > 60-day surgical delay, and patient receipt of postoperative care at an outreach visit (postoperative outreach) and > 60-day adjuvant delay.

Results

We identified 30,337 rural-residing patients who received breast cancer surgery, of whom 4071 (13.4%) experienced surgical delay. Among surgical patients, 14,501 received adjuvant therapy, of whom 2943 (20.3%) experienced adjuvant delay. In adjusted analysis, we found that patient receipt of preoperative outreach was associated with reduced odds of surgical delay (odds ratio [OR] 0.75, 95% confidence interval [CI] 0.61–0.91); however, we found no association between patient receipt of postoperative outreach and adjuvant delay (OR 1.04, 95% CI 0.85–1.25).

Conclusions

Our findings indicate that preoperative outreach is protective against surgical delay. The traveling oncologists who enable such outreach may play an integral role in catalyzing the coordination and timeliness of patient-centered care.

Automatic Topic Title Assignment with Word Embedding

Abstract

In this paper, we propose TAWE (title assignment with word embedding), a new method to automatically assign titles to topics inferred from sets of documents. This method combines the results obtained from the topic modeling performed with, e.g., latent Dirichlet allocation (LDA) or other suitable methods and the word embedding representation of words in a vector space. This representation preserves the meaning of the words while allowing to find the most suitable word that represents the topic. The procedure is twofold: first, a cleaned text is used to build the LDA model to infer a desirable number of latent topics; second, a reasonable number of words and their weights are extracted from each topic and represented in n-dimensional space using word embedding. Based on the selected weighted words, a centroid is computed, and the closest word is chosen as the title of the topic. To test the method, we used a collection of tweets about climate change downloaded from some of the main newspapers accounts on Twitter. Results showed that TAWE is a suitable method for automatically assigning a topic title.

Unmasking vaccine hesitancy and refusal: a deep dive into Anti-vaxxer perspectives on COVID-19 in Spain

Abstract

Background

At the time of the emergence of COVID-19, denialist and anti-vaccine groups have also emerged and are shaking public confidence in vaccination.

Methods

A qualitative study was conducted using online focus groups. Participants had not received any doses of vaccination against the disease. A total of five focus group sessions were conducted with 28 participants. They were recruited by snowball sampling and by convenience sampling.

Results

The two major topics mentioned by the participants were adverse effects and information. The adverse effects described were severe and included sudden death. In the case of information, participants reported: (1) consultation of websites on which scientists posted anti-vaccination content; and (2) distrust.

Conclusions

At a time when anti-vaccine groups pose a major challenge to public health in general, and to COVID-19 vaccination campaigns in particular, this study is a first step towards gaining deeper insight into the factors that lead to COVID-19 vaccine refusal.

The role of social media in public health awareness during times of war in Sudan: snakebites and scorpion stings

Abstract

Background

Snakebite envenomation (SBE) and scorpion sting envenomation (SSE) are significant neglected tropical diseases that primarily affect impoverished communities in rural areas of developing nations. A lack of understanding about snake and scorpion species and their distribution exacerbates the disabilities and fatalities caused by SBE and SSE. In Sudan, particularly in regions affected by ongoing conflicts where healthcare resources are scarce, social media platforms offer a cost-effective approach to addressing public health challenges. Our aim in this study is to highlight the benefits of using social media for data collection and health promotion in such environments.

Methods

We present a cost-effective communication and data collection strategy implemented at the Toxic Organisms Research Centre (TORC) of the University of Khartoum, focusing on a Facebook group, “Scorpions and Snakes of Sudan”, as our primary social media platform. Additionally, we discuss the lessons learned and the initial impact of this strategy on enhancing population health literacy.

Results

The group community is composed of ~ 5000 members from 14 countries. During the period from January 2023 to January 2024, we received 417 enquiries about snakes and scorpions belonging to 11 families and composed of 55 species. In addition, 53 other enquiries covered a range of organisms and their tracks (e.g., spiders, skinks, chameleons, foxes, sun spiders, centipedes, lizards, moth larvae, and insect tracks). The first photographic evidence of Malpolon monspessulanus in Sudan was via the group activities. The rare species Telescopus gezirae, the Blue Nile cat snake, is also documented via the group member’s queries. Recognizing the evolving nature of social media use in public health, we also address the current limitations and evidence gaps that need to be addressed to effectively translate best practices into policy.

Conclusion

In conclusion, utilizing Facebook as an institutional platform to share scientific information in simple Arabic language underscores the proactive roles that citizens, scientists, and public health stakeholders can play in leveraging social media for eHealth, eAwareness, and public health initiatives. This approach highlights the potential for collaborative efforts, particularly during crises, to maximize the benefits of social media in advancing public health.

Detection and prediction of drought by utilizing integrated geo-spatial and Markov approach in Balochistan, Pakistan

Abstract

Pakistan is exposed to variety of hazards. Drought is one of the hydro-meteorological hazards causing loss of life and soil moisture, reduction in agricultural production and decline in groundwater level. Balochistan is the largest province of Pakistan which has been severely affected by drought. This study is an effort to analyze and forecast the spatial pattern of drought in Balochistan using Markov Model. Both primary and secondary data were utilized in Geographical Information System (GIS) environment to model the current and predict the future pattern of drought in the region. The main input spatial layers included land cover, natural difference vegetation index (NDVI), natural difference water index (NDWI), groundwater level, precipitation and current drought. The spatial pattern of drought is delineated into extreme, moderate and low/no drought zones. The analysis reveals that the currently, the extreme, moderate and low/no drought zones are spatially extended over 9.9% (37,053 km2), 83.11% (288,553 km2) and 6.21% (21,584 km2), respectively. While the predicted drought presents shocking results, where the prevalence of extreme, moderate and low/no drought zones may spatially extend over to 51.14% (191,364 km2),28.78% (99,945 km2) and 16.09 (55,881 km2). The extreme drought may encroach current moderate drought into predicted extreme drought. Additionally, the occurrence of drought in Chaghi district may be more in future, where chances of extreme drought occurrence is 20.15%. Second most prone region is Kharan, where chances of drought are 11.35% and finally, third region is Khuzdar, where the probability of extreme drought is 8.90%. However, Awaran, Panjgur, Kech, Zhob and Sherani districts are also prone to moderate drought in future. There is dire need to build mini and micro dams to conserve rain water and farmers should plant less water dependent crops. The results and findings of this study have potential to assist disaster management authorities and decision makers to formulate zone specific drought risk reduction strategies.

Discrete gradients in short-range molecular dynamics simulations

Abstract

Discrete gradients (DG) or more exactly discrete gradient methods are time integration schemes that are custom-built to preserve first integrals or Lyapunov functions of a given ordinary differential equation (ODE). In conservative molecular dynamics (MD) simulations, the energy of the system is constant and therefore a first integral of motion. Hence, discrete gradient methods seem to be a natural choice as an integration scheme in conservative molecular dynamics simulations.

Digital-Public Spaces and the Spiral of Silence: Hyperliberal Illiberalism and the Challenge to Democracy

Abstract

The digital space has created a new form of public space: one which provides a dangerous blending of public protest, mob justice, and acquiescence. It offers transformative beliefs a voice while mob justice encourages sanctions against (and the erasure of) detractors. This article argues that the digital is not antithetical to the public sphere but has instead generated a ‘false public.’ It argues that hyperliberal illiberalism acts as a form of social control that triggers a Spiral of Silence, an intolerance of opposing ideologies and a fracturing of the public sphere into macro- and micropublics. This article argues for a return to both free expression and meaningful debate which are fundamental to the proper exercise of democracy.

Understanding factual belief polarization: the role of trust, political sophistication, and affective polarization

Abstract

Political opponents are often divided not only in their attitudes (i.e., ideological polarization) and their feelings toward each other (i.e., affective polarization), but also in their factual perceptions of reality (i.e., factual belief polarization). This paper describes factual belief polarization in the Netherlands around three core issues. Furthermore, this paper examines who are most susceptible to this type of polarization. Analyses on the 2021 Dutch Parliamentary Election Study reveal that citizens hold different perceptions than their political opponents about income inequality, immigration, and climate change. This type of polarization is strongest among citizens who have hostile feelings toward their political opponents and, paradoxically, among those who are highly educated and interested in politics. Trust in epistemic authorities did not mitigate factual belief polarization, perhaps because this trust has itself become politicized. These findings underline that factual belief polarization constitutes a core pillar of political polarization, alongside ideological and affective polarization.

Evaluation of the contribution of individual arteries to the cerebral blood supply in patients with Moyamoya angiopathy: comparison of vessel-encoded arterial spin labeling and digital subtraction angiography

Abstract

Purpose

Vessel-encoded arterial spin labeling (VE-ASL) is able to provide noninvasive information about the contribution of individual arteries to the cerebral perfusion. The aim of this study was to compare VE-ASL to the diagnostic standard digital subtraction angiography (DSA) with respect to its ability to visualize vascular territories.

Methods

In total, 20 VE-ASL and DSA data sets of 17 patients with Moyamoya angiopathy with and without revascularization surgery were retrospectively analyzed. Two neuroradiologists independently assessed the agreement between VE-ASL and DSA using a 4-point Likert scale (no- very high agreement). Additionally, grading of the vascular supply of subterritories (A1-A2, M1-M6) on the VE-ASL images and angiograms was performed. The intermodal agreement was calculated for all subterritories in total and for the subdivision into without and after revascularization (direct or indirect bypass).

Results

There was a very high agreement between the VE-ASL and the DSA data sets (median = 1, modus = 1) with a substantial inter-rater agreement (kw = 0.762 (95% CI 0.561–0.963)). The inter-modality agreement between VE-ASL and DSA in vascular subterritories was almost perfect for all subterritories (k = 0.899 (0.865–0.945)), in the subgroup of direct revascularized subterritories (k = 0.827 (0.738–0.915)), in the subgroup of indirect revascularized subterritories (k = 0.843 (0.683–1.003)), and in the subgroup of never revascularized subterritories (k = 0.958 (0.899–1.017)).

Conclusion

Vessel-encoded ASL seems to be a promising non-invasive method to depict the contributions of individual arteries to the cerebral perfusion before and after revascularization surgery.